rs38513559 SNP Detail

Summary

• ID
  rs38513559
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:15895956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGCCCATC GAGCTGCTGT GCTGGGGGTA GCATGAGCAA
  CACAGACACA TGGAGTGCCT GAGAGCAGCA CTAAAGGATG AGCGAGCACA CTAATCTTAC
  Y
  CTCCAGGTCC CACCAGCTCC TGTAGCCACG GGCTCAAGCC AGCGCCTGTC AGTCTAGAAT
  GAAGAGAGCA GGAGAGCACA TGGTGGCGGG GGGGGGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51880833	NES14893709	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	C	T	C	T	C	T	C	C	T	C	T
ss148378220	ENSMUSSNP4306272	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38513559					SNP	T	T	T	T	T	C	T	C	T	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51880833	NES14893709	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:15895956 () rs orientation: forward

Symbol	Name	Function Class
Rr155078	regulatory region 155078	356 bp distal
Rr160786	regulatory region 160786	45 bp proximal
Rr164335	regulatory region 164335	1012 bp distal
Slc8a2	solute carrier family 8 (sodium/calcium exchanger), member 2	968 bp downstream
Tssr64587	transcription start site region 64587	1837 bp downstream
Tssr64588	transcription start site region 64588	1821 bp downstream