rs38514209 SNP Detail

Summary

• ID
  rs38514209
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135258749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATCATT GCTTCTTATT
  GCTCATTCTG TTCTATTGGA TGTCTTTCCA CCTTTGTTGA TCATTTTGTC TGTTGATGGA
  CACTTGTGTT ATTTCCATCT CTTAGCTATC AAGAAGAAAG CTGTTGTGAG CATCAGTGTG
  CCTGTTTTTG AATAAACATT TTTTCAGACT TACTGGGTGT GAACCTATGA GTGCAGCTGT
  K
  GAATCATCCA ATGACTCTCT TAAGGCTCAG AATCTTTTTT TTTTTTTTTT TTTTCTACAC
  ACTGACTTCA CCGATTAGTT TTCCTCCTAG CTTTCCCGAT ACTTTCCAAT TCTTTTTCTG
  TTTTTTTTTG AAAACGTTTT TTCTTTTTTT TTTTTCGTTT TTTTTTTTTT TTTTTGTGGA
  AATACAGTTT TACAGAAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51651416	NES14650430	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38514209					SNP	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51651416	NES14650430	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135258749 () rs orientation: forward

Symbol	Name	Function Class
Manba	mannosidase, beta A, lysosomal	within coordinates
Tssr31836	transcription start site region 31836	172 bp upstream