rs38514727 SNP Detail

Summary

• ID
  rs38514727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:36352934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAACCCCAG CAAGTCATTG
  AACCCGTGGT CAGGCCGGCC CTGTCTTGAG TTCTAGTGTC CTAGGGAGAT GCTAAGCCTC
  TTGACCTGTC TGGCCAAGAG CTTTCCCCTC TTTAAAGGGA CTCCCTAAAG GGACTAAATG
  AGAGAAAGTA CCTGCGAAGT CACAGTCCCA GAGCGGGGGA CCGGTACAAT GTGAGCAAAC
  R
  CAGGCATGGA TGGCTGCACT TGTGTGAACT GCCAAAGGGA GAGCCTTTCA GGAGCTGGAT
  GTCCTAACGC TGAGCCCCTG GGCCATGTGG CTATGCGACC GGTGCTCTCA AGGGACTTCC
  TTTCTTCCTC CTCTCCCTTC TCCCCTCCTC CTCCTCTCCC TCCTCCCCTC CTCCTCTCCC
  TCCTCCTTTG TTTTTTTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51237996	NES14288959	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38514727					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51237996	NES14288959	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36352934 () rs orientation: forward

Symbol	Name	Function Class
Arid5a	AT-rich interaction domain 5A	within coordinates
Gm70518	predicted gene, 70518	within coordinates
Rr409287	regulatory region 409287	1107 bp proximal
Rr409288	regulatory region 409288	1233 bp proximal