rs38515486 SNP Detail

Summary

• ID
  rs38515486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21015913 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCCCCA CAATGCTGCC
  TGTCTCCGCT TCCCCATGGC AAGCATGTGC CCCCACGCAG AGCTAACTAG GCCTGGGAAC
  TGAACTCAAG CCTTGCAAAG CAAGCACTTT TGTGTGCCCT TCACTGACGG AGCCATCTCC
  CCAGCCTCTA ACAAGCAGCT ACTGAGTGCC TCCTGTATAC CAGGAACTGA TCTAGTTGGT
  R
  TCTGTCTTAA CCAGCTAGGG ACAGAACCCA GGTCTCCCCC ATGCTCCCCA CTGGCTCCCC
  AGTCACACTG CAGCTTGGCT AGTGGTTTAG GGGTGATCAG AAGTGTTACT GCTTCCTTTG
  AAGTCTCACT CTGTCTGCAC ATCTTGCTGA AGATGGACCC CCCCACACAG CCCTCGGGCC
  TCCGGCAAAG CAAACAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51993540	NES15007102	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38515486					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51993540	NES15007102	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21015913 () rs orientation: forward

Symbol	Name	Function Class
1700084C06Rik	RIKEN cDNA 1700084C06 gene	within coordinates
Rr193947	regulatory region 193947	1313 bp distal
Rr208293	regulatory region 208293	within coordinates
Tyk2	tyrosine kinase 2	within coordinates