rs38515666 SNP Detail

Summary

• ID
  rs38515666
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:79713515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGTCCA CACTATTCCG
  CAGTCCCTTG GTCTTGTCCC TTCCCACCAA CACAAGCAGA GACACTTGAA CCTGCATCAA
  ATTCTCACTC TCAAACAGGT CCCAGGGTTC ATGCCATAGC TGACCGTGGC CTTGATGGAA
  CTGGAGAGCT TTTTTAGCTG CTGTCAGCTC TGCATAGTTG ATCTTGGATA CGGAGCTCGG
  M
  GGCAACTTAT TTATGAATGT GCATAGAATA ACCGCATCCA TCTTTCAGAC CCTTCTGGAA
  GTCGGGACTG ATGCAGAGGC TTTTGAGTCC CTCTAACCAG CTTCAGAGTT CGTCTTCCTT
  TTGGGAGTCA CATTTGGACA GGAGCTGGTT CTTGGGCCCT GCCAAGACCC CAAAGAATGG
  GCACTTGTTG AACTGCGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50577317	NES14063646	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	C		C	C	A		A
ss322721658	CHEV_8_81510785	CHEVERUD	SCREENING_POP	f	SNP											C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38515666					SNP	A	A	A	A	A	A	C	A	A	C	C	C	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577317	NES14063646	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:79713515 () rs orientation: forward

Symbol	Name	Function Class
Gm8056	predicted gene 8056	within coordinates