rs38518404 SNP Detail

Summary

• ID
  rs38518404
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127921216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GATGATTAGC TTCTGACTTT CGTTCTTCTG AATTTGCTGA AGCCAGATGC
  Y
  GTTCCTGAGA AGGGGAAAAT GGACAGAACT GAACATTTTT GAAGGCTGTT           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50944567	NES14144920	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		C
ss323531639	CHEV_10_127522403	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38518404					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944567	NES14144920	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127921216 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1b	ATP synthase F1 subunit beta	within coordinates
Cpgi2382	CpG island 2382	1200 bp distal
Gm55458	predicted gene, 55458	within coordinates
Mir677	microRNA 677	within coordinates
Rr441098	regulatory region 441098	1122 bp proximal
Rr441099	regulatory region 441099	1222 bp proximal
Snord59a	small nucleolar RNA, C/D box 59A	1131 bp downstream
Tssr96320	transcription start site region 96320	1409 bp downstream
Tssr96321	transcription start site region 96321	1362 bp downstream
Tssr96322	transcription start site region 96322	163 bp upstream
Tssr96323	transcription start site region 96323	684 bp upstream
Tssr96324	transcription start site region 96324	785 bp upstream
Tssr96325	transcription start site region 96325	945 bp upstream
Tssr96326	transcription start site region 96326	962 bp upstream
Tssr96327	transcription start site region 96327	978 bp upstream
Tssr96328	transcription start site region 96328	1025 bp upstream