rs38519212 SNP Detail

Summary

• ID
  rs38519212
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:74629156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGACAT GTAGACTTAG
  GAGGAAAAGC GAAGGGATCT TTTCTTAGAG GAAAATGTTT GCCACCTGAT GGAGCAGTCC
  AACATCTTTG TAACAGCTGG TGCACACTTA ATTCCAACAC TCAACCTCAA AAGGGTGGTT
  TCATGGAAAG ATAAAGCTGA GTGAGCTTCG AGAGGCATTG ACAGACCGCT TTGTTGAGGA
  R
  TGGAATTCTC TTTCCAAGAG TTGGAAGACC TGGGAGACAA AATTTACAAA GTGAAGTATT
  TAAAGCATCC CTACACAGTC CCTGGGGCTC TCTTCTCTGG ACCAAGGGAA TGTGCTATCC
  TTTGACTTCC AGAGTCCAGG CAGCAGGACT CCTATAGTGA ATATAGGGGG AGAACCCAGA
  CCAACAGTGA AGGAAGATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50474140	NES13692186	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G		A	G	G		G
ss325688646	CHEV_18_74655739	CHEVERUD	SCREENING_POP	f	SNP									G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38519212					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50474140	NES13692186	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:74629156 () rs orientation: forward

Symbol	Name	Function Class
1700120E14Rik	RIKEN cDNA 1700120E14 gene	within coordinates
Myo5b	myosin VB	within coordinates