rs38521926 SNP Detail

Summary

• ID
  rs38521926
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:52153413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCATGCGA TCCAAGACTT
  TAACAGTAAC ATTTTAGGAT ATTTTCAGTG GGTGTATTTT TTTTTACGTT TGCAGAATTT
  TTACAATACA GACTGCCTTT TATTCTTAGC TGTTAATTGG ATATTTTCCA GTGTCTTTGT
  CAGCATAACT TTGGTATTCT GTCATATGAA TTGTGCTTTA GTCAGCTAGA AGACTTTTCA
  K
  TGATACAAAT GGAGTTTTGG TAACAGTGCC CTGCAGCACA AATCTTTTAT CCATACTGGA
  TCATTTTCTT ATGATAAATT TCCTATAAAT CCAAGAGCAT TGTAAAAGTT TTAACAGTCT
  GACTGGATCT TCTACACTAT AACCTTTAAA AATATATTGA TTATTTTTAT GTGAATATGT
  GCAGTCCAGC ATGAATTTAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss50950852	NES13933449	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs38521926					SNP	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50950852	NES13933449	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:52153413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi240	CpG island 240	237 bp distal
Gm28177	predicted gene 28177	within coordinates
Gm31812	predicted gene, 31812	355 bp upstream
Rr366897	regulatory region 366897	within coordinates
Rr410805	regulatory region 410805	514 bp distal
Rr410806	regulatory region 410806	within coordinates