rs38525880 SNP Detail

Summary

• ID
  rs38525880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:74024538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTCTCA GAGAGCTTCT
  TAACTGGCTT CATCAGCTGA GTCCCAAATC TCACCCCAAA CCCACGAGAG AGAGATCAGA
  AATACCAAAA AAGACCTCAG AGCTCTTTGG GAGACTTCTA GAACAGAAGA GAAGGGGAAC
  AGTCTGGCGT TGTGGGGACT AATGCACTCC CAGCTGTTCC CGAATAGAGG TGGGCATTCA
  R
  AAAGGCAATG TGTCTTAAAC TATGGCAAGC AGGATTGGCA TTAGGACTGG GAGTGTCTTT
  GTCACTAGTC TAGAGCTAGA AGGTCACAGT TCACACTGAG TGGCAGTTCC CTGAAGATGT
  CCCAGAGCAA AAGATGAAAC TAGGAAAAGA ATATTCTCTC CAAGGGAAGA AGTTGGATCA
  TGATGATGTG TGTCTGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276054	NES14516452	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38525880					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276054	NES14516452	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:74024538 () rs orientation: forward

Symbol	Name	Function Class
Rr17340	regulatory region 17340	538 bp distal
Rr17341	regulatory region 17341	1063 bp proximal
Rr27623	regulatory region 27623	1211 bp proximal
Rr34548	regulatory region 34548	1831 bp proximal
Tns1	tensin 1	within coordinates
Tssr12228	transcription start site region 12228	882 bp upstream
Tssr12229	transcription start site region 12229	1415 bp downstream