rs38526457 SNP Detail

Summary

• ID
  rs38526457
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40348012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTGATTTG TGACTAGAGG CATGTCTTAA AGCTTTAGAC
  TCATTCATGA CATTTTTCAA TGAATGCTAA GTAAGTAATC AATGAAAATC TTCAATAGAA
  M
  AAAGAAAAAG TGAAGAATAA ACAAACTGGA CTGTATCCTT GAAGAGCAGA GGCTCGCCAA
  GGCTCAACGG CAAGCACAGC ACAGGCAAGC TGCTAAGCAA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677670	NES14011087	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38526457					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677670	NES14011087	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40348012 () rs orientation: forward

Symbol	Name	Function Class
Gm51668	predicted gene, 51668	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676832	regulatory region 676832	1179 bp proximal
Rr676833	regulatory region 676833	1840 bp proximal
Tssr88924	transcription start site region 88924	1655 bp upstream
Tssr88925	transcription start site region 88925	1610 bp upstream
Tssr88926	transcription start site region 88926	1563 bp upstream
Tssr88927	transcription start site region 88927	1545 bp upstream
Tssr88928	transcription start site region 88928	1474 bp upstream
Tssr88929	transcription start site region 88929	474 bp downstream
Tssr88930	transcription start site region 88930	529 bp downstream
Tssr88931	transcription start site region 88931	548 bp downstream