rs38527999 SNP Detail

Summary

• ID
  rs38527999
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:19917205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGCCTTG CACTGAGGGC
  TCAAGAAGCC CATCAGCCAA GATGCAGAGT CCTGATAAGT TAAGCCTGTG AGCTCAAACG
  GACATTGTCT CCACAGTGGG GCAGATTCAA AACAGAGATT TTCGTTTTCA CTCCCAACGA
  CTTATTAGCA AAGTTAAAAT GTAAACCGCA GAGGGATTTT TCCAGAGCTG TTTCTCATCC
  Y
  TCTTTTTGGT ACCACCCCAA ATGTTCTGTA CTCAGAATAA GAACAGAATA GGGAAATACT
  TTCTGGACAG CTTTCTCTCT GTTGAAGTCT CCTCGAATTC CATGGTTTAC GGGCAACCTT
  CTCCCAAACA AGCTGCTGTT TGGAAATGCG ATTCTTTTGG AGTTCCGCCC TCTGCTAATG
  TAGCTTCTAC AGAGGGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51072303	NES14365079	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38527999					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51072303	NES14365079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19917205 () rs orientation: forward

Symbol	Name	Function Class
Gpr141b	G protein-coupled receptor 141B	84 bp upstream
Tssr121608	transcription start site region 121608	280 bp upstream
Tssr121609	transcription start site region 121609	220 bp upstream
Tssr121610	transcription start site region 121610	81 bp upstream