rs38528478 SNP Detail

Summary

• ID
  rs38528478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:135257015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCAGTATGG TGATATTCAT TTTTATAACT ATGCCGATGA
  CTGCTGGAAT TGGAAGATCT TCCCAAAAGC TCGATTAGTG TCTGAATATG GCTACCAGTC
  Y
  TGGCCTTCTT TTAGCACACT AGAAAAGGTA AGCCACTGGG CTCTTGATTT TCCCCCTGAT
  TTACAATGGT AGATGGTGGG TTCAGATGAG AGACACTTCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51651434	NES14650460	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38528478					SNP	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51651434	NES14650460	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135257015 () rs orientation: forward

Symbol	Name	Function Class
Manba	mannosidase, beta A, lysosomal	within coordinates
Tssr31836	transcription start site region 31836	1906 bp upstream
Tssr35788	transcription start site region 35788	784 bp upstream