rs38532300 SNP Detail

Summary

• ID
  rs38532300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105246315 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCGTTC AGCCACCAAG
  ATAAAAAAGA ATATCAAAAG CACATTGAGA ATATGGGGGG AATGTCTAAT TATGTCTGGA
  AAAGCCCCAG AAAGTTTCAG AGTGGAGAGA AAGTATATGG CCAAAGAATT GAAAATGAGT
  GAGAATTTTC CAAAGGACAG CAGCACAGAG GACTGTAACA TGTATAAAGT ATTCGGATGA
  Y
  GTTGGATAAA CTTATGCGAC TGGTACACAG TGAACATGGA AGAAAACAGC AAGAATAGCT
  CCCTCAGGCC CATGTACACC TGGAACATGG TACCCAAGTA CACGATGGTA CCTCTACTGA
  ATCAGGAAAC ACAGAGGAAA GGTCGCTTTT TAAGAAAGAT GGTAAATTCA TTTAGGAGGA
  TGCTGCATTT GAGGTATCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51921047	NES14939916	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38532300					SNP	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51921047	NES14939916	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105246315 () rs orientation: forward

Symbol	Name	Function Class
Hpx	hemopexin	within coordinates
Tssr68381	transcription start site region 68381	802 bp downstream
Tssr74058	transcription start site region 74058	1901 bp upstream
Tssr74059	transcription start site region 74059	1569 bp upstream
Tssr74060	transcription start site region 74060	1561 bp upstream
Tssr74061	transcription start site region 74061	1513 bp upstream
Tssr74062	transcription start site region 74062	1489 bp upstream
Tssr74063	transcription start site region 74063	1479 bp upstream
Tssr74064	transcription start site region 74064	1452 bp upstream
Tssr74065	transcription start site region 74065	1426 bp upstream
Tssr74066	transcription start site region 74066	753 bp upstream
Tssr74067	transcription start site region 74067	741 bp upstream
Tssr74068	transcription start site region 74068	728 bp upstream
Tssr74069	transcription start site region 74069	683 bp upstream
Tssr74070	transcription start site region 74070	1707 bp downstream