rs38533269 SNP Detail

Summary

• ID
  rs38533269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:97596168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCCAGGC TTCTTCAGCT
  TAATTTGCCC CACAGAATAA ATTGTCTATA CACAAAAACT GAAAAGAGTA GACATGTCCA
  GGGGGTTTGG GCTTAGAATA TTAAAGATCT AGATCTTATC AGATCTGTAA AAGAATTTTA
  AAAGTAGTTA TGATTTAAAA TAGTATCTCC TATAGCTTCT GAAAGTGAAT CCTTCAGAAG
  Y
  TGTCTCAGTT CAGTTTGTCT TGTTCTCAGA AGTGTCATCA AAATTCTCCA CAAGATCTGG
  AACAACAGCA ACTACTACTA CTACGACTAC TACAATTTCA ACTACTTCTT TCTTTCTTCT
  TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTCCTTCCC
  TTCTTCTTCT TCTTCTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss50996652	NES13919796	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs38533269					SNP	T	T	T	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50996652	NES13919796	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:97596168 () rs orientation: forward

Symbol	Name	Function Class
Gm66506	predicted gene, 66506	1941 bp upstream
Mir7225	microRNA 7225	1657 bp downstream
Pde4dip	phosphodiesterase 4D interacting protein (myomegalin)	976 bp downstream
Tssr30803	transcription start site region 30803	1977 bp upstream