rs38534536 SNP Detail

Summary

• ID
  rs38534536
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:38284108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAAAGGC GCCAAGGACT
  ATAAGAACAC CTGATACTGG CTGGTATTGG GGAGGTAAAA TCAGACTTAG GAACAATGTG
  TAGGGATGGG GGAAGCAAGG AACTGGTTTA AGTCGTTAGG TAACGGAGCA AGGGAATGTA
  AAAGCCTACC TACTGTCTGA AAATGTTTTG GTCCTAAATA GCAACAGAAT GGTTTCAGCA
  Y
  GGTATACATC CTTTCTAACT AATTATGCAT CCTTTCTCTT TCTCTAACTC CATATACTCA
  ATCACATACT CTGGGTAAAT CTGTTCTTTC CGGAAAATGA CAAAGACGGA CGGATTCAGC
  CTGGTGTCCA CACAGCTGTC ATAGAGCGCG GGAGGGCTAC TTAATGTCAT ATTTCCTTCA
  ATGACACTTC CAACCAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51288669	NES13775834	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38534536					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51288669	NES13775834	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38284108 () rs orientation: forward

Symbol	Name	Function Class
Gm53283	predicted gene, 53283	20 bp downstream
Rr628794	regulatory region 628794	1963 bp distal
Tssr60393	transcription start site region 60393	868 bp upstream
Tssr60394	transcription start site region 60394	481 bp upstream
Tssr60395	transcription start site region 60395	405 bp upstream
Tssr60396	transcription start site region 60396	79 bp downstream
Tssr60397	transcription start site region 60397	1091 bp downstream
Zc3hav1	zinc finger CCCH type, antiviral 1	mRNA-UTR