rs38534710 SNP Detail

Summary

• ID
  rs38534710
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:24023067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCATTC TTGGGGAATC
  TGGCGCTCAT TTTTGGAGTC TGAGGGCATA CGGTACACAG ACATACCTGC AAATAAAATA
  CCCATACACG TAAAATTAAA ACTAAATTAA TGAACAGATG GATGAGTGAA AAGAAGATAC
  ATACTTATTT ACCTTTGTTC ATATTCTGTT ATGCACTGAA ATGGCTGTAT GCATAGAAAA
  M
  TATTTTATTC CTGATATAAT GCAGTACACC CATAAAACAA ATTCAAATCA GAAACCTACT
  TTCTCTTCTA CATAACTGGC ATCTTAACAT CAGTTTCAAG AGATGCCATT GATACAAAGT
  TTAAGAGCCC TGACTTGGTG AGGCAGAAAC GTAACCTCTG GCCTTACAGC CAATGAGCAG
  AGCATGGCTT CATCCATCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50930089	NES13480096	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38534710					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50930089	NES13480096	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:24023067 () rs orientation: forward

Symbol	Name	Function Class
Gm53062	predicted gene 53062	within coordinates
Rr36322	regulatory region 36322	419 bp distal
Rr395981	regulatory region 395981	555 bp downstream