rs38535148 SNP Detail

Summary

• ID
  rs38535148
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:60742827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATGAGGA GGTCTGAGTA
  ATAACCCAGC CACTTTGCCA GCCCAGCCTC ACATCCTCCC TGCAGAGAGG GAAGTGACAC
  AGACCCTGAG GGGTGCATCC ACATCCACAC CAGAAGCAAA GACCAACACA AAATCGCTCT
  GTAGAACGAC CCACACTTGG GTGGGAAGGG GCATGCAGGG ATAGGAACAG GGGTTCCTAG
  M
  GCCAGCCAGC TCTAGCTTTG CTAACGGGCT GACAGAAGTC CCCATTTGCC TCTTTCCTAG
  TACAGGGAGA GAAAATAGGC CAGGCAGGGG CTGCCACATG CCCTGAGTCA CACCCCAAAC
  CCCAAAGGCC CCCCCTGATT GTTCAGCTTA CTCACTCTGA CTGGGTCCTC CCTGCAGCCC
  AGCTTCCCCA GGATGCTCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50418272	NES13463262	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38535148					SNP	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50418272	NES13463262	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60742827 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr538593	regulatory region 538593			within coordinates
Rr538594	regulatory region 538594			340 bp proximal
Synpo	synaptopodin			Intron
				Noncoding-Transcript-Variant
Tssr153456	transcription start site region 153456			303 bp downstream
Tssr153457	transcription start site region 153457			335 bp downstream