rs38535421 SNP Detail

Summary

• ID
  rs38535421
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26385486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTGACAT CTTGACTTGA
  ACCAGCACGC AGATCGGAAA GCCACTTCAA AGGAAACCTT GTAGAGAAGA AGAGCAACTT
  TCTAATTCCT GTCAAACTAA GAGGCGGAAC CAAGCCCAGA AGTAGCCTCA AGGCCTGGAG
  AGAGCAGAGC AGAGAGCCGA CTCCACACTC CAGCCAAGGC TCAAGAAAGG CTTTGCTTCT
  S
  GAGGCGGCAT TGTTCCTCCA TCCGCTCAGC CTCCGCGTCT CCCCTCCGCG GACTCTCAGA
  ATCACTGCCT TTCTCGGGTA CCTCTCCGCC GACCTCCGGG ATCTGGGTGC CTGGGTCCCA
  AGGCGCACCC AAGCAGGCTC ACTGCAGAGG CTGGGGCGCC GCTCGGAAGA CTAGGAGCCT
  CCGCACGAGT CCGCCCCGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51444668	NES14435655	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38535421					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444668	NES14435655	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26385486 () rs orientation: forward

Symbol	Name	Function Class
A830092H15Rik	RIKEN cDNA A830092H15 gene	within coordinates
Cpgi13015	CpG island 13015	within coordinates
Cpgi13016	CpG island 13016	1835 bp proximal
Nlgn1	neuroligin 1	within coordinates
Rr77454	regulatory region 77454	within coordinates
Tssr32829	transcription start site region 32829	283 bp upstream
Tssr32830	transcription start site region 32830	163 bp downstream
Tssr32831	transcription start site region 32831	469 bp downstream
Tssr32832	transcription start site region 32832	493 bp downstream
Tssr32833	transcription start site region 32833	517 bp downstream
Tssr32834	transcription start site region 32834	567 bp downstream
Tssr32835	transcription start site region 32835	597 bp downstream