rs38536656 SNP Detail

Summary

• ID
  rs38536656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:24867834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCAAGT GTTAAACCAA
  TTTTCCTAAC TTTTTCTTTT CAAACTGTGA AAAAAATAAT TAGTTTTAAT ATCAGTTTCC
  AACAAAGTAA TTAATTATAT TGAGTTGATC AAATACTTGT GAGTTTATTC CAAGACTTTA
  AATACACATC CTGATGTCCT TGTCTAGATT CAGGTCTGGC CCATATTCTT TTAATAATCT
  Y
  TTCTGTGTGT CCCAGGAAGG TCACTCGGGT TTACTCTGGC TATCGAGGGT AACACATTCA
  GCAAATTCTT AAGCTCTTGT CATCTCCCTA GCAGCCTTTT GTGGCCCTTT TACCAGTCTA
  CCGGGCGGTG CAGAAAGAGA CAGGTTGCCC TGGGCAGTGT TGGACAGCAC AGCTCTTTGT
  CTCTTGTTGT CAGCCAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50652929	NES14021632	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38536656					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50652929	NES14021632	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:24867834 () rs orientation: forward

Symbol	Name	Function Class
Gm18377	predicted gene, 18377	1042 bp downstream
Gm68954	predicted gene, 68954	106 bp upstream
Rr675442	regulatory region 675442	within coordinates
Rr675443	regulatory region 675443	117 bp proximal