rs38536676 SNP Detail

Summary

• ID
  rs38536676
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:69542481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGCTTTC CACTGTTATG
  TTCATAGGCT TAAGTGTAGT GATCATAAAA GACCTCAATA AGCCATGTTT AGACAAGCCA
  GTCATTCCCA AATGGCTCTT GTTGGCTGAA GCTTTCGGTT GTATAGAATC AAACCTCTTC
  ACGGCTCCCT TAAAGCCAGG CAGAGAGCTT TGAAAGAAGA CTTTTTTTTT TCCTCTTTTT
  W
  AAGTATCTGT TGTTTTCCTG AAAATAAGGT TCCATTTGCA CAGGTTAATT GGCAGCTTGG
  CTCTGTGGGT GGCTCATTGG TTAAAAGCGT TTCAGCTGAA GGGTTTTAGC TAGGCGCCCT
  CCAGCCTGAC TAATCCTGTC CTGAGCTGTC AGTGGGTCAT GTGATAACAC TGCAGCGAGG
  GGAAGGGAAA AAAAAAACAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50565125	NES14071317	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38536676					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50565125	NES14071317	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:69542481 () rs orientation: forward

Symbol	Name	Function Class
Atp6v1b2	ATPase, H+ transporting, lysosomal V1 subunit B2	Intron
Cpgi20406	CpG island 20406	415 bp distal
Rr400869	regulatory region 400869	1042 bp downstream
Rr664484	regulatory region 664484	1173 bp distal
Rr664485	regulatory region 664485	117 bp distal
Rr664486	regulatory region 664486	1022 bp proximal
Slc18a1	solute carrier family 18 (vesicular monoamine), member 1	mRNA-UTR
Tssr77656	transcription start site region 77656	1102 bp downstream
Tssr77657	transcription start site region 77657	1085 bp downstream
Tssr77658	transcription start site region 77658	1033 bp downstream
Tssr81518	transcription start site region 81518	614 bp upstream