rs38536873 SNP Detail

Summary

• ID
  rs38536873
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135254001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAA GAGCACAGAG GGACTCTTGC
  W
  CTCCTGGGAC TTTCATTCTC CAGTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51380618	NES14469474	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	A	T	A	A	A	T		A	A	A	A
ss145530805	ENSMUSSNP5182845	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38536873					SNP	T	T	T	A	A	T	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380618	NES14469474	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135254001 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	1597 bp upstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Rr12584	regulatory region 12584	1401 bp distal
Rr28593	regulatory region 28593	within coordinates
Tssr8958	transcription start site region 8958	1443 bp downstream
Tssr8959	transcription start site region 8959	1407 bp downstream