rs38537090 SNP Detail

Summary

• ID
  rs38537090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:121315606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCACTAC AGCCCCCTCC
  CCGTACAAGC CCGCCCACCC GGGCCCGGGA ATGCTCACCC ACATCCATCC ATTCCGGAGG
  TAACAGGCGG CACTTCTGTC TCTGTTTCAG GTTAATGGCC AGCCACAGGG GCACGTCCAC
  GGGTAAGCCG GGGTTGAAGG GCCCCAGGTC CCCCTGCAAG GACAACGCAG ACCCCAGGTG
  R
  AAAGGAGCGG TGACCCGAGC ATGATCCCAG GCCGCCGCCC CGTACCGCCC TGGCTCACCC
  CGATCAGGTA GATCTTGTCC AGACTGAAGT TCGGGATGAT AGTCACCAAC TCCTTTTCGG
  CCAAAAACTC CACCTCGGCC GCATCCATGT TGAAGAGTAG GCGGCCCAGG CCCGTTACCG
  CCCCTCCGCG ACTCAGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51983400	NES14995664	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38537090					SNP	G	G	G	G	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51983400	NES14995664	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:121315606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21156	CpG island 21156	within coordinates
Gins2	GINS complex subunit 2	within coordinates
Gm10614	predicted gene 10614	633 bp upstream
Rr401181	regulatory region 401181	70 bp upstream
Rr671590	regulatory region 671590	427 bp proximal
Rr671591	regulatory region 671591	649 bp proximal
Rr671592	regulatory region 671592	659 bp proximal
Tssr83202	transcription start site region 83202	152 bp downstream
Tssr83203	transcription start site region 83203	192 bp downstream
Tssr83204	transcription start site region 83204	204 bp downstream
Tssr83205	transcription start site region 83205	214 bp downstream