rs38538025 SNP Detail

Summary

• ID
  rs38538025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28391669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACTGCC CGACAGAGCT
  GGTCATAGTA ATACATGTCT TTAGTCCCAG CACTCAGGAG GCAGAGGCAG GCAGGTCTCT
  CAGTTTGCGT ACACAGTGAG TTCCAGGCTA GCCAGCCCTA CAAAGTGAGA CCCTGTCAAA
  AAAAAAAAAA AAAAAATCTG GAGCTAGACC CACTCACTAA CACTACTAGT CACTTAGGAA
  R
  GTCACGGCCT CTAAGAGCCT CGGTTCCTTT TCTGTGTTAA GATGTTCGGG GAGCTGACGA
  GATGGCTCAT TTCAAAGGTC CTGAGTTCAA ATCCCAGCAA CCACATGGTG GCTCACAACC
  ATCCAGAATG AGATCCGATG CCCTCTTATG GTGTGTCTGA AGACAGCTAC AGTATACTTA
  TGTATAATAA TAAATCTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ
ss51886712	NES14910681	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NZW/LacJ
rs38538025					SNP	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51886712	NES14910681	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28391669 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18715	CpG island 18715	815 bp proximal
Fbxo27	F-box protein 27	605 bp upstream
Rr644337	regulatory region 644337	423 bp proximal
Rr644338	regulatory region 644338	1285 bp proximal
Rr644339	regulatory region 644339	1786 bp proximal
Tssr65494	transcription start site region 65494	572 bp upstream
Tssr65495	transcription start site region 65495	611 bp upstream
Tssr65496	transcription start site region 65496	759 bp upstream
Tssr65497	transcription start site region 65497	768 bp upstream
Tssr65498	transcription start site region 65498	788 bp upstream
Tssr65499	transcription start site region 65499	1753 bp upstream