rs38539722 SNP Detail

Summary

• ID
  rs38539722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:56323770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCAAATA GAGACACGAT
  AAAATATTTT CTCTTCTTCC CCTCTGACAA CTCTGGGGAG GGGATCTTTG TTTTTTCACA
  TAGTTTGTGA CCTGATCGTT GCCAAAACTC ACTTGCAGTA GTATGAACTC TGCTTCCATT
  GTTAACTGTT AATCTCTGTG ATAAGGCTAT TAACTCCTAA CTTGGAAGCC AAGAAAATGT
  R
  CCTCACCTGC AATTATAGTT TACTGAAAAA GTCACCAAAG AAAGTGCCAG GCACTTTGGA
  AAGTAATTAG GGTAGTCAGT GAATTGAAAG ATCTAAAATG CTCTGAGATT ACAAAAGAAG
  CCATCATGAA GTGAGTATCC AAGATTGCTC ATGGAAAGTT TTACCCTTGT GGATAATTCA
  AGTTTGGGCT TTCTGGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52019908	NES15038582	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38539722					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52019908	NES15038582	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56323770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21795	CpG island 21795	852 bp proximal
Gm36940	predicted gene, 36940	420 bp upstream
Peak1	pseudopodium-enriched atypical kinase 1	within coordinates
Rr195774	regulatory region 195774	1770 bp distal
Rr204231	regulatory region 204231	1771 bp distal
Rr206471	regulatory region 206471	within coordinates
Rr401386	regulatory region 401386	1525 bp upstream
Tssr85252	transcription start site region 85252	1901 bp upstream
Tssr85253	transcription start site region 85253	1929 bp upstream
Tssr89707	transcription start site region 89707	1537 bp downstream
Tssr89708	transcription start site region 89708	1575 bp downstream
Tssr89709	transcription start site region 89709	1613 bp downstream