rs38540090 SNP Detail

Summary

• ID
  rs38540090
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:94005735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTGATG GACGATAAGC
  TGGGAGTTGA AACAAACCTT TTCTTTCCAG GGTTGATTTT GGTCCTCGTT CTTTATCATC
  CTTGACAGGC TCCCGCTGTC TGTCCGCCTG GGCCACGGTG TTCTTCTTCA CTCACTCATT
  CATCCTCCGC CCTCCTTCCC ATTCTCTGTC CAGCCTATGT CCCTTTCCTC ACGGCTCTAA
  Y
  AGACACTGAT ACTCCTTTAC CCAGCTCTCT CTCTACTCTT AGCCCCATCC TTTCAGAAAT
  ATCTTTTCAG TACATAGCCC TATCAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAGCAGA
  GCAAATGCTA ATGCTAAAAG TATTAGGCAG TAATAATTAA TTAATTTTAA AAAAACAGCT
  GAGAAAATAA GTTCTAAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51369973	NES13733973	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	C	C	C		T	C	T		C
ss321864582	CHEV_6_93978748	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38540090					SNP	C	C	C	C	C	T	T	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51369973	NES13733973	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:94005735 () rs orientation: forward

Symbol	Name	Function Class
Magi1	membrane associated guanylate kinase, WW and PDZ domain containing 1	within coordinates
Tssr62166	transcription start site region 62166	82 bp downstream