rs38541986 SNP Detail

Summary

• ID
  rs38541986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:65734409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAACAAGT GATTCTCAGC
  CCTGAGACGT GAAATCACAG CATCACTTTC TCTTTCAAAG AGTAAAGTGT TTAAGGATCA
  GGCTTAGGCC TGGCTGGCTG ACAGCGGGGA CAGATGAGCT GAGAACCCAA GAATTTGGCC
  ACAGAGCATG CGCAGATGTG GGCTCAGCAA GGGCATCTCT GCCTGTACAG AAGGAAGGCA
  R
  TGTCGGGACA GTGACACGTT GGGAAGAAAT ATGGAGACAT TGCTTTGTTT TACTTAATTA
  ACGGTGACAA GATATTAAAA TTGGATTGTT GATTTAGAAC AGGAAATCCT AAATAATGTG
  TGTTTTAGGC TATTCTCCCT CATCTTGAAA AACTGGCTCT CGAAGACCAT TATTCTGAGG
  GATTTTGTTA TTTCTATGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50963784	NES13941975	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38541986					SNP	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50963784	NES13941975	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65734409 () rs orientation: forward

Symbol	Name	Function Class
Lekr1	leucine, glutamate and lysine rich 1	Intron
Rr577736	regulatory region 577736	1803 bp distal
Rr577737	regulatory region 577737	1024 bp proximal