rs38542041 SNP Detail

Summary

• ID
  rs38542041
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:12064542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCAAACA ATGCATGTCA
  TTATATGCAT GAAATTATCT TTCTAAATAT AAGAAGTGTC AATTTCTAAA CCTTGCTTCC
  CATAAGTCAA ATATGAGAAT GTGAGTCTGC ATTATTATCA GTTATTGTAA TCGCTATTAT
  TAACTTCTAG AAACATTTCA CTGAATCCTT TATCTCAGTC CTCCCAGTTA CAATGATACA
  K
  AAAGAGGAAG GAAATACATT TTGTTCTTCT GTATGTGATT ACACTGAGTT CAGGTTTCCA
  AGGCTTGCTG TATCTACTCA CAACATAGGT TAGAATATTT CTAAGCACTC CTTGATTGCA
  TTGTGCTCAC ACAATGTTTT TGAATCTGTT TTTTTTTAGA CACATGGGAT CTAGTTCACA
  GCACTGCTAT TTAAGTCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50614078	NES13634612	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38542041					SNP	G	G	G	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50614078	NES13634612	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:12064542 () rs orientation: forward

Symbol	Name	Function Class
Or4d10c	olfactory receptor family 4 subfamily D member 10C	432 bp downstream