rs38542102 SNP Detail

Summary

• ID
  rs38542102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:137178844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATCCTCTT CCAAAGATAC
  CTTGGGTAAT TTGTATCATT CTGGAGCAAA TACAAAGCTA GAAGCTGAGG GTATACTGAC
  AGTGCGGCGA TTCCTCCAGG AACCTCAAGC TTTAGCAGTT TTCTGAAACG GAAGGCGCTG
  TCTGCCCTCA TTGCCACTGA CAGCTTCGCT GTGGCTCTGT GGCTTTCGCT GTCACCTGCC
  Y
  TGCCAGACCA AAGCCCAAGC TGGCTCTTCT GGACTTTCAT ATTGTTAACT CTTCTCTGTG
  CTCTGACCTT GAACTTCATT AATTTATCTT AAAACTCTGA TCAGATTATC TGAAGGTAAT
  TTTCTATGTA CAAATATTCT GAATATATAC ATATATAACA CACATATATG ATATATGTAT
  TTTTTTTTGC TTAAAATATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51382468	NES14469094	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38542102					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51382468	NES14469094	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:137178844 () rs orientation: forward

Symbol	Name	Function Class
Gm19215	predicted gene, 19215	38 bp upstream
Gm37057	predicted gene, 37057	1036 bp upstream