rs38547254 SNP Detail

Summary

• ID
  rs38547254
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135709702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTTG GAATTAGTCG GGCTTTGAGG
  R
  TACTTGGTGG TGGAGGCGTT GGATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51451021	NES14001704	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss133816895	ENSMUSSNP6780827	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss321989803	CHEV_6_135682722	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38547254					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51451021	NES14001704	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135709702 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18096	CpG island 18096	within coordinates
Gm14329	predicted gene 14329	166 bp upstream
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr63774	transcription start site region 63774	1437 bp upstream
Tssr63775	transcription start site region 63775	58 bp downstream
Tssr63776	transcription start site region 63776	883 bp downstream
Tssr63777	transcription start site region 63777	903 bp downstream
Tssr63778	transcription start site region 63778	961 bp downstream