rs38549472 SNP Detail

Summary

• ID
  rs38549472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:89804952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTAACACA CCATAGGAAA
  CACACACACA CACACACACA CACACACACA CACCACTACA AGTAAGACAC TAAAATTAGT
  TTACACATCT CACCTCATGC TGCTGCTTCC AGCCTTTCGG ACACCAATGC ACTGAAACAC
  AGGCACCCTG CATGGCACCC CTCCAAAGGT CAGGTCCAAG GCCCCTCTTT GCACCATACC
  Y
  TGCTTCTTTC TAAGAGACAG AGCCAGCAAC CCCAGCTTTG GGTTCTCTGA CCATCTGAAT
  GGCTTCTCAG GTTCTCTCTT GACCTCAAAG CTATCCCTGG AACCCCACAT TCTGTATGCT
  CATTTCCCAC TCATCCTGCC CCATGACCCA CCTATAGACC CCTATCTATT GCACTTCTGT
  TACCCAAACC AGAAACCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50762401	NES14234506	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38549472					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50762401	NES14234506	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:89804952 () rs orientation: forward

Symbol	Name	Function Class
D9Mit157.1	DNA segment, Chr 9, Massachusetts Institute of Technology 157.1	within coordinates
Rasgrf1	RAS protein-specific guanine nucleotide-releasing factor 1	within coordinates
Rr205313	regulatory region 205313	1982 bp proximal