rs38550161 SNP Detail

Summary

• ID
  rs38550161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:190702240 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACCACTC GAGGGCACCG
  AGGCAAACAG AAAAGCTCAT CTGACGAACC CTCTGGCTCC TCAGTAGCTC TTTCAGTTCG
  AGCTGAAGCA GGGTCCCACC GCAGAGGCCC TCCCAACCGT GCACATACAA CTGGGACGAA
  GTCACCTACC TGGCTTGCTG GGATCGTGAG AGATCAGGAA TGTGTTAAAG CAAGTGAGAG
  R
  TGGAAGAGAG GGAAGGTCAG AAGAGGAGAA GATGTCAATC ATGTAGAAAA GGAAGGACAG
  AACAAAGAGG TGGAGAAAAT GGATGGATGC AAAGAAAGGG TGTCGGGGAG GCAGGGCCAG
  GGATGGAGAA AGAGAAGTCA CGGCCTGAAG GCAGACCATC TTCACCTCTA AGGGACAAGC
  CCTGGCCGTT CTGGTCGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51424360	NES14445923	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38550161					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51424360	NES14445923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:190702240 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr426014	regulatory region 426014			975 bp proximal
Rr426015	regulatory region 426015			1601 bp proximal
Vash2	vasohibin 2			Intron
				Noncoding-Transcript-Variant