rs38550246 SNP Detail

Summary

• ID
  rs38550246
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123269475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTAAG AAACTATTTT
  TTTTCATAAA GAAAAAGGAA AGGTAGTTGG AAATTTATTT GCTCATTTAG TTGGTTAATT
  TGGGAGACTT GTTCTGCCTT TTTTTTTTTT GAGAGTGCTA GCACAGTTGT AACTGCAAAG
  AGGCCTATGC TAAGAGCTAC ACTGCTTGGC TAGGCTTCCT GGCCTACCAC CAGCAGTTTC
  Y
  GTTTGTGTTT CAGAACCGGC TGGTCAAGAG CAGGCTACAG GAAAATACTT TGTGGCATTG
  GGGAGAAAAG TCTGAAATTT TAAAGCCAGG GAGCACAGAT CCTCCAAAGC GAGTTCCTCA
  GTTAACTTCT GAATGGAGGT TGCCTTGGGA ACAGGGAGGC CTACTCCCCA GCCACAGTGG
  CTCTTTCTCA AGGCAGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	KK/HlJ	WSB/EiJ
ss50808730	NES14203091	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	KK/HlJ	WSB/EiJ
rs38550246					SNP	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50808730	NES14203091	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123269475 () rs orientation: forward

Symbol	Name	Function Class
Lars2	leucyl-tRNA synthetase, mitochondrial	within coordinates
Rr193658	regulatory region 193658	126 bp proximal
Rr203065	regulatory region 203065	417 bp proximal
Rr208064	regulatory region 208064	within coordinates