rs38552487 SNP Detail

Summary

• ID
  rs38552487
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:131004717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGAGTTCT TTATATATGT
  TGGATATTAG TCCCCTATCT GATTTAGGAT AGGTAAAGAT CCTTTCCCAA TCTGTTGGTG
  GTCTTTTCCT TCTTTTTTTC TAAACTTTTA ATTTTTCAAA AAAAATGTTT GAGTTAACTT
  TTTGGATTAC TACATAAAAT AGTGAATGTT GTCAGGGAAT TTTCTTTTTT AAAATGTTTG
  M
  ATTTTTTCTT GTTAAATTAG CCTACAAAGT AGCGGGTTTC CATAAAGAAT TTTAATATTT
  CATTTTCGTT GTTGCCCCCG CCCCACCACT ACTACAGCAT TTTGATATAC ATGTGCCTGC
  TTTGTTCTGG TTTGCTTCTT GCCCCCTCCC CCCAATACCT CCTCTCTCCT TCCTCCCCAG
  GTCGTTTTTC TTCTCCACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51634418	NES14649182	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38552487					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634418	NES14649182	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131004717 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	Intron
Rr585293	regulatory region 585293	1957 bp distal
Rr585294	regulatory region 585294	1223 bp proximal
Rr585295	regulatory region 585295	1320 bp proximal
Rr585296	regulatory region 585296	1368 bp proximal