rs38553603 SNP Detail

Summary

• ID
  rs38553603
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78181147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGGCCAG AATCCTGGCA
  GAGCTAGATC CTAGAAGACT CAGATTATTT CCAAACTGTC CTGTTAGGAA GAGAAAGTGA
  ATGCCCAATC CCTTCTATCT CCCCATGACA CCTGTTAGAT CTGCCCTAAA TAGTGAGATC
  GTGGGATTTT AGAAGATGTT CAAACATTCA ACGATTTCTG GTCCCCTAGG GATACAGTGT
  R
  GTGGGCTAAG TGCCTGTACT GAGACCAAGG CACTCCGGTT CTTAGCAGAC AGAAAGGTCT
  CTGTCTCCAG GTAGCCAGTG AAAAGCTGGC TGAAGATGCT GCAGGGGTAG GGGTAGGGGT
  AGGGGTAGGG TGGGGGTCAT TTCAGGCTCT GCAGCCCTAT GGTACTCAGT TCTTGAGAAG
  GCAGAGACTT TGGGTGCTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss51284806	NES14519458	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38553603					SNP	A	A	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51284806	NES14519458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78181147 () rs orientation: forward

Symbol	Name	Function Class
Cpgi455	CpG island 455	304 bp distal
D1Mit215	DNA segment, Chr 1, Massachusetts Institute of Technology 215	1849 bp proximal
Gm33152	predicted gene, 33152	1459 bp downstream
Rr370614	regulatory region 370614	562 bp downstream