rs38556075 SNP Detail

Summary

• ID
  rs38556075
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128045845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATATGTA TCTGCCGCAG
  AGTAAGAGAA ATGGGTGAGA GCCAAACCAC GTGGCTTTAG AAGTCTGCGG AGATCTGTCC
  ATCTTAGCCA GGACACGCTG CTACTGCTGA CAGCAATTTT ATAGACAGAG TATTTTGTGT
  TCAAATAAAC TTTAATTACA TGAATTATAA TTTTTATTTT ATATTTTGCT AAATTTAGTC
  R
  TTCTCTTTCT CCCCTAAGGA CATCATCAGT TATCACCATT GTAGCACCCA GGGTCAGACA
  AGTCCAAACT GAATATTCCG CATACATATT CAACTGTTTC ACCAGGTTTT CCTCAAACCA
  AAATACTGCT TTTATTAAGT ACATTCTGTG GCCAAGGGAG ATGGGAGTTG TGGGTCTGAA
  CAGGCTCCAA AATGGATTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50948661	NES14143290	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G		G
ss323532318	CHEV_10_127647032	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38556075					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948661	NES14143290	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128045845 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	1642 bp proximal
Gls2	glutaminase 2 (liver, mitochondrial)	within coordinates
Rr224447	regulatory region 224447	555 bp proximal
Rr402345	regulatory region 402345	1734 bp upstream
Spryd4	SPRY domain containing 4	within coordinates
Tssr99849	transcription start site region 99849	1790 bp downstream
Tssr99850	transcription start site region 99850	1812 bp downstream