rs38556411 SNP Detail

Summary

• ID
  rs38556411
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113371187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAAGTCT CTACTTACTT
  CCTCCCTTAT CCTGCTGTCT CTTTCCTCTT ACATAAGATG TGAGGCCAAA TGTTTGGGTC
  CCTGGGGCCC TCCACAGTCC AGTCACACTC CCTGTAATCT TGGGAGCTCT TATTTTTTCA
  GACTTCACTC TCCTTGGCCT CTCAGTTCCT TCTGACTTCC TGCTCGCCTT GGGACCTTGG
  Y
  ACATGCCACC TCACTCTGCT TGAACTGCCG TTTGCTCGGC TCTGCGTTCA ATGGCTCGCT
  CCCAGTTTGC CTTGACCATG TATTCCTCTG GAAGCTGGGA GTAGCAGTAT TAGAATGTAT
  GCTTAACATG TACAAGGCCC TGGTCTCAGT TCCCAGCACC AAAACAGAAA GGAAGACATC
  TCTGCTCTGT CCCTTGACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841799	NES14761167	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38556411					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841799	NES14761167	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113371187 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17842	CpG island 17842	1104 bp distal
Tssr58208	transcription start site region 58208	1742 bp downstream
Tssr58209	transcription start site region 58209	1709 bp downstream
Tssr58210	transcription start site region 58210	1144 bp downstream
Ttll3	tubulin tyrosine ligase-like family, member 3	within coordinates