rs38556754 SNP Detail

Summary

• ID
  rs38556754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6095923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTGTGACC CCTGTGTAAC
  GGTTTGATTC CCAAAGGGCT TACGACTCAC AGGTTGAGAG CCAGCCACTG CCTTAAAGTC
  GTCTAGAATC AGTTTTCTTT CTTTTTTGAC AGACAAGATG TTTAATTCCG TTGTACTGAA
  GGAAAGCCAT TTTATGTATT TTTCTTAAGT GCTCTATCAG TAATGACAAT TCTGAAAGCC
  Y
  CTGTGTTATA TTTTAACAAC ACAGTCACCT CCGGTTCTGT ATTCACTGTC CGTGTTGTGA
  CTCCCACAGT ATAAATTCCT CCAGTTGATC TTCATGAATT CTTATATTTG ATCCCCCCCC
  CCCTTAGGCC TCTGAATTCC GAGTGAGTCC GAGTTAAAAA TGGGAGGAGC ACCCTCTAGC
  TGATAAACCT GGGTAATGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575706	NES13653296	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38556754					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575706	NES13653296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6095923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	321 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	1071 bp upstream
Gm59262	predicted gene, 59262	209 bp upstream
Rr370438	regulatory region 370438	415 bp upstream
Rr405816	regulatory region 405816	1412 bp downstream
Rr405817	regulatory region 405817	within coordinates
Rr543275	regulatory region 543275	1453 bp distal
Rr543276	regulatory region 543276	1589 bp distal
Rr543277	regulatory region 543277	within coordinates
Rr543278	regulatory region 543278	166 bp proximal
Rr543279	regulatory region 543279	780 bp proximal
Rr543280	regulatory region 543280	1119 bp proximal
Rr543281	regulatory region 543281	1222 bp proximal
Rr543282	regulatory region 543282	1415 bp proximal
Rr543283	regulatory region 543283	1478 bp proximal
Rr543284	regulatory region 543284	1526 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	683 bp upstream
Tssr154538	transcription start site region 154538	211 bp upstream
Tssr154539	transcription start site region 154539	736 bp upstream
Tssr154540	transcription start site region 154540	1128 bp upstream
Tssr154541	transcription start site region 154541	1162 bp upstream
Tssr154542	transcription start site region 154542	1188 bp upstream
Tssr157816	transcription start site region 157816	992 bp upstream
Tssr157817	transcription start site region 157817	1055 bp downstream
Tssr157818	transcription start site region 157818	1517 bp downstream