rs38563257 SNP Detail

Summary

• ID
  rs38563257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:132286474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGAAGTCT TGCTTACTGA
  TCCCAGCTCC ATATTGAGGC AAGGAAATGC CTGGAAATAA CAATTATTCA TTTGTAAACC
  TGTCACCAAA AAGATGTGGC AAATGAAGGT GGCCTTTACC CACTGGTTTG CCTTTATATA
  GTGCACACAC TTGGGCGAAG ACTTACGTTG CTCTTATCTC TACCCCACGA ACACTCCCCT
  Y
  TTTGGCTTCC TGTACCAATT GGCCCCATGG ATATGTTTCT GCTCGTCGTG TTCCATGTGA
  TGTGTCCACC TCCACACTGT CACCTGTACC CTGTGCCTAC AGATAGGGCA GTTGCTGTTG
  GCTCTGTCAG CATATTGGGA CCTCCCCAGA GTGGTCCTGG CCATACCTGG ATATCCCGGG
  CCCTCTCGTA GGACTGGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373308	NES14476095	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38563257					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373308	NES14476095	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:132286474 () rs orientation: forward

Symbol	Name	Function Class
Cpgi727	CpG island 727	1760 bp proximal
Tmcc2	transmembrane and coiled-coil domains 2	within coordinates
Tssr13633	transcription start site region 13633	1234 bp upstream
Tssr13634	transcription start site region 13634	1181 bp upstream
Tssr13635	transcription start site region 13635	1076 bp upstream
Tssr13636	transcription start site region 13636	480 bp upstream
Tssr13637	transcription start site region 13637	164 bp downstream
Tssr13638	transcription start site region 13638	1579 bp downstream
Tssr13639	transcription start site region 13639	1935 bp downstream