rs38565476 SNP Detail

Summary

• ID
  rs38565476
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:143282420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAAGTGA TATTTTGTCT
  AGATCAAAAG AAAAAGGCTG TACTATCACT GCCCTTAGGA CTTCTAGAAT ACCATTAGCA
  AAGGCCAAGG GACTTTGAGC AATGGCGAGT GACAGATGTC CTCCTTCCTC TCCCCTGAGG
  TCAGTTTATA TTTTCAGAGT CTCAGTAGTT AGTAAACAAA ACTATCATCT TCAGATATTA
  S
  AGCAATATTT TAATCTTAAG TGCCGAATCC TGCTTGGCCA TGTGGAAGAG ACAGTATGAC
  ATGATTTCCT GCCCTGGAAT GGAGCCAGCA GGGCATGGGC CACTATAAAT GTCGACAGTT
  GCTGGGCATA ACTCTTGTTT GTACAAAAAA TAAACACACA CACATATACA CACACACTAA
  TTTATGTTCC TCCTTCAGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51458612	NES13997505	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38565476					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51458612	NES13997505	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:143282420 () rs orientation: forward

Symbol	Name	Function Class
Rr380238	regulatory region 380238	within coordinates