rs38568076 SNP Detail

Summary

• ID
  rs38568076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:21574600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGCCAAGG CAGTTACCTG
  CTTGCTCTCC CACGTGGAGC TCATGTCCAT ACATGAGTTG GTGCATACTT GTGTGCTCAA
  AGCCCACACT CGTACTCTTA CGAGAGAGAT GTCTTACTTT CCTCTGAGCC CCCCTCTCTT
  AAGTTTAGGC TTTGAGTTTA AGCCTAAACT AAAATATCTT CAATAAAATC TCTACTTCTG
  R
  TTCATTTTAC ATAGGTATTG TGTGGATCAG GAAAATCAGT CTCCAAGTTT TTATAACAAC
  AACAAGACAC ACAAGTGCAA AACCACAGCT TCCCATTTAT TTCAATGGCT CAGCAAATAT
  ACACACACAT ATGTACATGC ACATGTGTGT AATATATACA TTTGTAGAGA TTAAGACACA
  CAGAAAACAC AGTAAAACAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss50694214	NES13603150	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		A	G	A		G
ss325752842	CHEV_19_21671726	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs38568076					SNP	G	G	G	G	G	G	G	G	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50694214	NES13603150	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:21574600 () rs orientation: forward

Symbol	Name	Function Class
1110059E24Rik	RIKEN cDNA 1110059E24 gene	77 bp downstream
Gm38486	predicted gene, 38486	1034 bp upstream
Gm59243	predicted gene, 59243	within coordinates
Rr356955	regulatory region 356955	1801 bp proximal
Rr364167	regulatory region 364167	802 bp proximal