rs38568131 SNP Detail

Summary

• ID
  rs38568131
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11048402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCATTCA GCTGGAGAAG
  ACATACAGGG TCAGGGGGGG AGGGGAAGAG GGGCAGAGCT GGCACTTCAG CTTCAACATG
  TCTCCTCTCC CCATCTGTAC TGTTAAAAAC AGACCACACG TAGTCTTTAC CATTGTAGCT
  ATTTATGAAA GTCATAGTCC AGTGGCATGA AACCCTTTAT GCTTCCTGCA CAGAGAGGTA
  Y
  GTCAAGATAT GTTAAACTTC CTTTCTGGGT ATTTTCCAAA AGAGCTCATC TAATTGTAGG
  AACCTTGATC TCTGGACAAC CTGCTCGTCA AGAAAGCAGA GTTCATTTCC AGGGAAGCAC
  AAAAACGTCT CTCTTTGTCA GTCTGCAGAG TTCAGATGCT GGATTTCTTA GTGAAGCAGG
  TGCTGGGGCC TTTACTGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50598010	NES13634468	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38568131					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50598010	NES13634468	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11048402 () rs orientation: forward

Symbol	Name	Function Class
Ms4a8a	membrane-spanning 4-domains, subfamily A, member 8A	within coordinates
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates