rs38568146 SNP Detail

Summary

• ID
  rs38568146
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:75713467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGGAAA CTTTGAAAAC
  GATATGAACG CTTATAAAGA CCAACTTGAG TCTAAACATT TGAAGCTGAA GCTGGTGCCT
  GGGTAGTCAG CCCTGAGTAC GTGGGGGCTG TGCCTGAATC GAGCCAAAGG CACTCAACGG
  CAGCGGAAGA GAAACGCTTC CGAGCCAGCC GAACCTGGAA GTCGGCTGCC GCGACCACTC
  S
  CTGGTAAGAC CACCGTGCTA TCATCTCCTG ACAGCCCCTT GGAGGCCCGG CCCGCTCCCT
  CGCCCCGAAG CCTGGCGGGT CTGTCACGCG AGGGCCGAAC CCGACTCGGC CGCTCCGATG
  CCCACCCATG ACGACCATCG GGAGACCGCA ACCGACAGCA CTCGCTTCGG AGAGGGTCTA
  CGGCGATCAC AAGAAACAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51719865	NES14560192	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38568146					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51719865	NES14560192	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:75713467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7192	CpG island 7192	within coordinates
Gm34851	predicted gene, 34851	1887 bp upstream
Gm62305	predicted gene, 62305	480 bp upstream
Rr390927	regulatory region 390927	1858 bp upstream
Rr404450	regulatory region 404450	263 bp upstream
Rr504550	regulatory region 504550	within coordinates
Rr504551	regulatory region 504551	287 bp proximal
Rr504552	regulatory region 504552	491 bp proximal
Tssr131679	transcription start site region 131679	466 bp upstream
Tssr134873	transcription start site region 134873	289 bp downstream
Tssr134874	transcription start site region 134874	319 bp downstream
Zc3h3	zinc finger CCCH type containing 3	within coordinates