rs38568994 SNP Detail

Summary

• ID
  rs38568994
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58663832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTGGGG ACTGCAGGGA
  CTTTGGTAGG GTTGCTCTGA ACTTGTCACA CTTCCTGAGT TATGCCAGGT GACCAGAGCT
  CAGAGCATTG CAACCTGCAG AGTTGTATTC TTGTTTCCAG TATTTGGTGT CATTACCCTA
  TTGTTTATAT TGTACCTAGA CAAGCCATGA ATTAAGACTA CCCAGAAACA CTGTGCCTAT
  W
  TCTGAGTTTG TGTGTAGCCA GCTGAACTCT ATTTTAATCC TAGTGGATAA CAAATCTAAG
  TTTCACCAAC TATAATCTCA TTGCTGAGGG AGGAGGCAGA GGCTCTGGTT GACTGGGGCT
  TCTAGTTCTG GGTAGGGCTA ATTAGATTCA GAATGCCATT TGCAAACTGC AGCTGGCTGT
  ATTAGGCCAG GGCCACAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss50904013	NES13492684	PERLEGEN	MM_PANEL2	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs38568994					SNP	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904013	NES13492684	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58663832 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	567 bp proximal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	232 bp distal
Rr365894	regulatory region 365894	1569 bp proximal
Tssr157269	transcription start site region 157269	1649 bp downstream
Tssr157270	transcription start site region 157270	1575 bp downstream
Tssr157271	transcription start site region 157271	335 bp downstream
Tssr157272	transcription start site region 157272	319 bp downstream
Tssr157273	transcription start site region 157273	798 bp upstream
Tssr157274	transcription start site region 157274	830 bp upstream
Tssr157275	transcription start site region 157275	850 bp upstream
Tssr157276	transcription start site region 157276	873 bp upstream
Tssr157277	transcription start site region 157277	1114 bp upstream
Tssr157278	transcription start site region 157278	1736 bp upstream
Tssr157279	transcription start site region 157279	1753 bp upstream
Tssr157280	transcription start site region 157280	1769 bp upstream
Tssr159961	transcription start site region 159961	230 bp upstream