rs38569980 SNP Detail

Summary

• ID
  rs38569980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86411734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCTCTT ACAGGCCTGA
  CTTCAAAAGA AATTGGCTTG CTGGAGAAGA AATAGTACTC TCTCCTGTGA TTCATAATCT
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCCCCCTCT TTCCTTCTTC
  CTCTTCCTCT ATGCCAAATT CTCTCACTCT CTTTTCTCCT TACCTAGTCT ATAAGGGCTG
  Y
  TATGTTCCTT TACTCCACCA TTCAAGACTT GCAGTCCTGA ATATCCAGGA ACTAGACGCT
  TGAATTTCAG TGTTGATCCC CTCGTAGACT AGAGTCACCC ATTCTGCACC ATGCGTGCCT
  CATGCCACCC TCTCCAGCTC CAATATGGGA ACCGGTGGAC CTCATCACCT GCCTTCAATG
  CACTCAGCAG ACACCCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50559678	NES13670038	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38569980					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50559678	NES13670038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86411734 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	442 bp proximal
Cpgi10353	CpG island 10353	1192 bp proximal
Gm54041	predicted gene, 54041	within coordinates
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	1343 bp upstream
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	1163 bp upstream
Tssr152243	transcription start site region 152243	1184 bp upstream
Tssr152244	transcription start site region 152244	1201 bp upstream
Tssr152245	transcription start site region 152245	1309 bp upstream
Tssr152246	transcription start site region 152246	1343 bp upstream
Tssr152247	transcription start site region 152247	1393 bp upstream
Tssr152248	transcription start site region 152248	1575 bp upstream
Tssr152249	transcription start site region 152249	1666 bp upstream
Tssr152250	transcription start site region 152250	1937 bp upstream