rs38573534 SNP Detail

Summary

• ID
  rs38573534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:77443628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTATTTAC TTGCTAATTA
  GAGAACTCCA GGCCAGAGCC CAGCCAGGCA TCCTTCCGTT GGAGGGAAGC AAGCCTGAGG
  CCTTTCACCT CTGTCTCTGT TTTTGAACAC ACACATCCTT TCGGGAACCG GGTTAGAAGT
  CAGCATCTTG GGACCTGGAG TGATTCATGC TTCTCACTAG CGGACTTTAC TTTTTCTCAT
  R
  TTGGATGCCA CCCTTTGGAG AAGGGGGCAA GCTCTGTGGA CAGTGCTGCT GTGTCACTGG
  TGTCCTGGGA GTGAGTGGGC AGGGGAAGGG GAAGGGATGA TGCCTCAAGG TGTGCCTTCA
  GGTTCTTGAT GGAGCCTCTC TCCTGCCGAA CCATTTCTCA GACTAGAAGG AGCCATGCTC
  CTACCTAAAG CTGTTAGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50884525	NES14160407	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38573534					SNP	A	A	A	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50884525	NES14160407	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77443628 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1760	CpG island 1760			722 bp distal
Gm49325	predicted gene, 49325			Intron
Rr402005	regulatory region 402005			1077 bp downstream
Rr434546	regulatory region 434546			1213 bp distal
Rr434547	regulatory region 434547			within coordinates
Sumo3	small ubiquitin-like modifier 3			Intron
				Noncoding-Transcript-Variant
Tssr94265	transcription start site region 94265			1727 bp downstream
Tssr94266	transcription start site region 94266			1554 bp downstream
Tssr94267	transcription start site region 94267			1539 bp downstream
Tssr94268	transcription start site region 94268			1141 bp downstream
Tssr94269	transcription start site region 94269			1114 bp downstream
Tssr94270	transcription start site region 94270			1076 bp downstream
Tssr98239	transcription start site region 98239			675 bp upstream