rs38574572 SNP Detail

Summary

• ID
  rs38574572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135501581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACTTCT GAGAGCCTCC
  AGCTCAGCGC ATCAATCTTC TCGAAATTTG AGGACACGGC TTTTCTGATT TCCAGTCACT
  TTTGACTACA AGGATCTATC TTGATTCCTT GAACTCACGT GCAGAGGACA TGAAGGAGCA
  GGGAACCCTG GGTGAGCAGG TGGGTGGGGC TTGTTTGGAT GAGGATCAAG GCCTGATAGA
  Y
  AGTTTGCCAG AGGTATGGAA GCAACTTCAC CATCTTCTGG CAAGCAGCTA GACTCTTAAG
  AGTGCTAGAA ACTGACAAGG CTGAACCTGG ACAGTGGACT CAAAGAGTGG AGGCCACCAA
  GAGAAGTCAG TGCTTCTCTG AGCATAGCAA AGGGAGAGGG CCAGGGAGCA TGAGGAATCA
  CTTTGGTAAG GAGAGGAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss51377800	NES14476932	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs38574572					SNP	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51377800	NES14476932	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135501581 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nav1	neuron navigator 1			Intron
				Noncoding-Transcript-Variant
Rr419191	regulatory region 419191			1365 bp distal
Rr419192	regulatory region 419192			1032 bp distal
Rr419193	regulatory region 419193			547 bp proximal
Rr419194	regulatory region 419194			1637 bp proximal