rs38577759 SNP Detail

Summary

• ID
  rs38577759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164945855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGAAGG TAAAAGAGGA
  AAGTCCTTTG GGATACATTT TTTCAGTGAA TTGTTTCTTT GTTGATACAC AGTCTTACCA
  GGCGGGCAGG CCTGGAACTT TCTGGGTTTA TGAACATGGC CTCCAGCTTG TGATGCTCCT
  CCTGCTCTGT CTCCTGAGTG CTGCACACTG TGCCTAGTCT GGGTGCCTGA GGACACAGTC
  R
  TCTTCTGTCC CGGTCCTGGC TAGCTCCGGA GAGGAGAGTG CAATGGCTTT CCTCAAGGAT
  CTCAGTGACA TAAAACATCC TCACAGTTGT CTTGATATAA GACAGGAGCT CAGATTCACT
  GCTGTCTGGT GAGACAACCA CATACAGTGT CAGACAGTGG CCCAGGGTCG CAACCCCTCA
  TCTCACGACA ACCTTGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51403050	NES14459573	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38577759					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51403050	NES14459573	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164945855 () rs orientation: forward

Symbol	Name	Function Class
Gm70481	predicted gene, 70481	779 bp upstream
Rr396491	regulatory region 396491	1973 bp upstream
Rr422319	regulatory region 422319	773 bp proximal
Rr422320	regulatory region 422320	986 bp proximal