rs38578940 SNP Detail

Summary

• ID
  rs38578940
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15782721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGGTTC AGAGCTTTGC
  AGTCACAGGT TTCTATTCAT TCTTAAAGCG TTGATCATCC TCGACAACCC TGACAAAGCC
  TGCCAAGTCA CATCCTCCTG AGCTCAAGGC TCCCATCTGG CCTCGAGGAG AGAGAAAGGC
  TTTCTCATCT TCCTCCTCCT CCTTAGGACT TCTCCATCCT CCTCTCGTGC ATCTGTGCTC
  K
  ATCCTAAAAC ATTCTCCTTC TGTTCACACT CCCACTGGTC CTGACCAGCT CACACTCTTC
  CTCCATCTTG CCCTGTTCCT GATCGTCCCT CAAAGCCAGA AGCCAGGCCA ACCATAGCTG
  GCCTCCACTG CTCCTAGTAG GTCTTCTCTT ACACACCTCT CACAGGCTTC CTCTAAATGG
  ACTCCCTCTT CACATCTATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640768	NES13617901	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38578940					SNP	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640768	NES13617901	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15782721 () rs orientation: forward

Symbol	Name	Function Class
Gm50348	predicted gene, 50348	within coordinates
Rr406864	regulatory region 406864	689 bp distal
Rr544634	regulatory region 544634	1473 bp distal