rs38580486 SNP Detail

Summary

• ID
  rs38580486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34923725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCCTGTAG CTGTGGGTGA GAGGGGTGAG CGGAGGCTAT
  TCCTTCATAG GTCGATGGCT TTCTGTTTCC CCATTGCTGG TTGGTAGAGC CAACAGAAAG
  Y
  GATGGAAATT GATCCTGTGT CTACACAGAC CATGAAGACC TCATCCTCTT AAGACAAAGA
  GAAGAGCAAA GTGAGCTGGA CCTTGGCATG GCTCTGCAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50525747	NES14089020	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	C	C		C	C	C	C		T
ss149109342	ENSMUSSNP939655	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss322578201	CHEV_8_35519625	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38580486					SNP	T	T	T	T	C	T	C	T	C	C	T	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50525747	NES14089020	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34923725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20247	CpG island 20247	869 bp distal
Gm39159	predicted gene, 39159	735 bp downstream
Gm45349	predicted gene 45349	within coordinates
Gm46038	predicted gene, 46038	347 bp upstream
Rr400818	regulatory region 400818	942 bp downstream
Rr662016	regulatory region 662016	786 bp distal