rs38580714 SNP Detail

Summary

• ID
  rs38580714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178232805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAACTTCG ATGAATAAAA
  ACTAATAATA AAAAATAAAA TACTGAGATG TAAAGTGAAT AAATAACTAT ATTAAAGAAA
  AATCAAGACA AAACAAAGGC CTCTACATTT AGTTACTTTT ACAAAAATAT TTAAATAAGT
  ACACATATAC CATGAAATTA TCATTAAAGA TTAAAACTAG ATATTAATTT GAGTCACATT
  R
  TTAGACATTT CAAAACTGTT GGGTTTTTTT TGTTTGTTTG TTTGTTTGTT TGTTTTGGGG
  GGGTTTCATT TAAGGGAGAA TCTTAGTATT CTGAGCTTAT CCATCAAATA ACAAAACACG
  CGATAGCCAA GTTTCTCAGT ACTCAAAATT CTCATCGGAA GGTCATGCCA AATTGCACCA
  TCAACATACA AAATGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51413010	NES14449894	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38580714					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51413010	NES14449894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178232805 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	387 bp proximal
Efcab2	EF-hand calcium binding domain 2	845 bp upstream
Gm70920	predicted gene, 70920	670 bp downstream
Gm70923	predicted gene, 70923	1249 bp upstream
Rr29069	regulatory region 29069	within coordinates
Rr372517	regulatory region 372517	within coordinates
Tssr10392	transcription start site region 10392	777 bp upstream
Tssr10393	transcription start site region 10393	791 bp upstream
Tssr10394	transcription start site region 10394	798 bp upstream
Tssr10395	transcription start site region 10395	812 bp upstream
Tssr10396	transcription start site region 10396	832 bp upstream
Tssr10397	transcription start site region 10397	1255 bp upstream
Tssr15493	transcription start site region 15493	1175 bp downstream